Structure of PDB 6zqa Chain JN Binding Site BS02

Receptor Information
>6zqa Chain JN (length=186) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTQPKVIRGPSDVYVPPSKKTQKLLRSNLQNDLELQQFLRESHLLSAFNN
IVYQDDQVIGKARSRTLEMRLNRLSRVNGHQDKINKLEKVPMHIRRGMID
KHVKRIKKYEQEAAEGGIVLSKVKKGQFRKIESTYKKDIERRIGGSIKAR
DKEKATKRERGLKISSVGRSTRNGLIVSKRDIARIS
Ligand information
>6zqa Chain D3 (length=787) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagauaguuaucugguugauccugccagucauaugcuugucucaagacaa
uaaauaacgauacagggcccauucgggucuuguaauuggaaugaguacaa
uguaaauaccuuaacgaggaacaauuggagggcaagucuggugccagcag
ccgcgguaauuccagcuccaauagcguauauugcucguaguugaacuauu
aauagggacggucgggggcaucaguauucaauugucagaggugaaauucu
uggauuuauugaagacuaacuacugcgaaagcauuugccaaggacguuuu
cauuaaucaagaacgaaaaacuaugccgacuagggaucgggugguguuuu
uuuaaugacccacucggcaccuuacgaggaguauggucgcaaggcugaaa
cuuaaaggaauugacggaagggcaccaccaggaguggagccugcgggaaa
cucaccagguccagacacaauauuugugggugguggugcaugugaugccc
uuguucuggcgcgcgcuacacugacggagccagcgagucuaaccuuggcc
gagaggucuugguaaaaacuccgucggggaacgaggaauuccuaguaagc
gcaagucaucagcuugcguugauuacgucccugcccuuuguacacaccgc
ccgucgcuaguaccgauugaauggcuuagugaggccucaggaucugcuua
gagaagggggcaacuccaucucagagcggaaauuuggacaaacuugguca
uuuagaggaacuaaguuuccguaggugaaccugcgga
...........................<<.<<<<<<...<..........
.>.....<<<<<<<.<<<<<....>>>>>.>>>.>>>>......<<..<.
..........>..>>.........<<<<<<.......<<<....>>>...
...............>>>>>>..>>>>>>>>.<.<<...<<<.<<...>>
....<<<<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>.
.....>.>>>>>>..>>.......<<....>>...>>>>..>>.>>>.>>
>...>>>...>>.>............<<...<<<..<<<<<<<<.<<<..
......>>>>>>>>>>>..>>>..>>..................<<....
.....>>.....<<<<<<<<<<<<..<<.<<<<<<..<<<.<<<<.....
....<<<<<.<....<<<<<...>>>>>......<<<.........>>>.
..>.>>>>>>>>>.>>>.....<<<<<<<............<<<..<<<<
....>>>>..>>>.....>>>>>>>............>>>>>>....<<<
<<<<<.......>>>>>>>>......>>...>>>>>>>............
>>>>>..<<<<.<<....<<<<<<<<.<<<..<.<<......<<<<<<<.
..<<.<<<......>>>.>>...>>>>>>>.....>>.>..>>>.>>>>>
>>>...>>.>>>>....<<<<<<<<....>>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6zqa 90 S pre-ribosome transformation into the primordial 40 S subunit.
Resolution4.4 Å
Binding residue
(original residue number in PDB)		M236 K268 I291 K292 A293 R304 G305 T315 R316
Binding residue
(residue number reindexed from 1)		M92 K124 I147 K148 A149 R160 G161 T171 R172
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6zqa, PDBe:6zqa, PDBj:6zqa
PDBsum6zqa
PubMed32943521
UniProtP40546|FAF1_YEAST Protein FAF1 (Gene Name=FAF1)

[Back to BioLiP]