Structure of PDB 9bct Chain J Binding Site BS02

Receptor Information
>9bct Chain J (length=645) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMMKDG
ELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNISFDP
SVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTIYSI
RSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRSALL
VQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAIIITH
AALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEP
LYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIG
NGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQMPRE
EAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPI
YLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANSRER
QDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTL
GRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSYVAR
VRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain9bct Chain J Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB9bct Structural basis of archaeal FttA-dependent transcription termination
Resolution2.5 Å
Binding residue
(original residue number in PDB)		D257 H258 D364 H615
Binding residue
(residue number reindexed from 1)		D254 H255 D361 H612
Annotation score4
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006353 DNA-templated transcription termination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:9bct, PDBe:9bct, PDBj:9bct
PDBsum9bct
PubMed
UniProtQ5JH24|FTTA_THEKO Transcription termination factor FttA (Gene Name=fttA)

[Back to BioLiP]