Structure of PDB 5odq Chain H Binding Site BS02
Receptor Information
>5odq Chain H (length=291) Species:
523845
(Methanothermococcus thermolithotrophicus DSM 2095) [
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MKYAFFLGCIMPNRYAGVEAATRTVMEKLGVELVDMTGASCCPAPGVFGS
FDQKTWLTLAARNLCIAEEMGVDIVTVCNGCYGSLFEAAHLLHDNKEALN
FVNEKLDKVGKEYKGNVKVRHFAELIYNDIGVDKIAEKVERPLNINVGVH
YGCHFLKPTDVKHLGSAERPVMLDEIVEATGAKSVPYADKMMCCGAGGGV
RARELELSLDMTNEKIENMIKAGADCTVNVCPFCHLQFDRGQIEIKEKFG
KEYNFPVLHLSQLLGLAMGMDPKDLALSVHQISVDPLLKKI
Ligand information
Ligand ID
9S8
InChI
InChI=1S/4Fe.4S
InChIKey
LJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 2.0.6
S1[Fe][S]2[Fe]13S[Fe][S]3[Fe]2
CACTVS 3.385
S1[Fe]S[Fe]S[Fe]S[Fe]1
Formula
Fe4 S4
Name
Non-cubane [4Fe-4S]-cluster
ChEMBL
DrugBank
ZINC
PDB chain
5odq Chain H Residue 302 [
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Receptor-Ligand Complex Structure
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PDB
5odq
Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
Resolution
2.15 Å
Binding residue
(original residue number in PDB)
N79 G152 C153 H154 C193 C194 C231 F233 C234
Binding residue
(residue number reindexed from 1)
N79 G152 C153 H154 C193 C194 C231 F233 C234
Annotation score
1
Enzymatic activity
Enzyme Commision number
1.8.98.1
: dihydromethanophenazine:CoB--CoM heterodisulfide reductase.
Gene Ontology
Molecular Function
GO:0016491
oxidoreductase activity
GO:0051912
CoB--CoM heterodisulfide reductase activity
Biological Process
GO:0015948
methanogenesis
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Molecular Function
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Biological Process
External links
PDB
RCSB:5odq
,
PDBe:5odq
,
PDBj:5odq
PDBsum
5odq
PubMed
28818947
UniProt
A0A2D0TCB4
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