Structure of PDB 3qtv Chain H Binding Site BS02
Receptor Information
>3qtv Chain H (length=251) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW
DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDI
ALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQP
SVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG
PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF
G
Ligand information
>3qtv Chain I (length=12) Species:
6421
(Hirudo medicinalis) [
Search peptide sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
GDFEEIPEEYLQ
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3qtv
Impact of ligand and protein desolvation on ligand binding to the S1 pocket of thrombin
Resolution
1.63 Å
Binding residue
(original residue number in PDB)
Q38 L40 L65 R67 R73 T74 R75 Y76 I82
Binding residue
(residue number reindexed from 1)
Q24 L26 L60 R62 R68 T69 R70 Y71 I78
Enzymatic activity
Enzyme Commision number
3.4.21.5
: thrombin.
Gene Ontology
Molecular Function
GO:0004252
serine-type endopeptidase activity
GO:0005509
calcium ion binding
Biological Process
GO:0006508
proteolysis
GO:0007596
blood coagulation
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:3qtv
,
PDBe:3qtv
,
PDBj:3qtv
PDBsum
3qtv
PubMed
22366545
UniProt
P00734
|THRB_HUMAN Prothrombin (Gene Name=F2)
[
Back to BioLiP
]