Structure of PDB 6x80 Chain G Binding Site BS02

Receptor Information
>6x80 Chain G (length=574) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIAD
SLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
GQSLKTRTMLQADINKLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGAS
SNQTVKATIGATQSSKIGVTRFETGAQSFTSGVVGLTIKNYNGIEDFKFD
NVVISTSVGTGLGALAEEINKSADKTGVRATYDVKTTGVYAIKEGTTSQD
FAINGVTIGKIEYKDGDGNGSLISAINAVKDTTGVQASKDENGKLVLTSA
DGRGIKITGDIGVGSGILANQKENYGRLSLVKNDGRDINISGTNLSAIGM
GTTDMISQSSVSLRESKGQISATNADAMGFNSYKGGGKFVFTQNVSSISA
FMSAQGSGFSRGSGFSVGSGKNLSVGLSQGIQIISSAASMSNTYVVSAGS
GFSSGSGNSQFAALKTTAANTTDETAGVTTLKGAMAVMDIAETAITNLDQ
IRADIASIQNQVTSTINNITVTQVNVKAAESQIRDVDFASESANYSKANI
LAQSGSYAMAQANSSQQNVLRLLQ
Ligand information
Ligand IDP8E
InChIInChI=1S/C9H18N2O6/c1-3(12)5(10)7-6(11)4(13)2-9(16,17-7)8(14)15/h3-7,12-13,16H,2,10-11H2,1H3,(H,14,15)/t3-,4-,5-,6-,7-,9-/m0/s1
InChIKeyZFZFJUIKYIVPNP-YXGHPGITSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(C(C1C(C(CC(O1)(C(=O)O)O)O)N)N)O
OpenEye OEToolkits 2.0.7C[C@@H]([C@@H]([C@H]1[C@H]([C@H](C[C@](O1)(C(=O)O)O)O)N)N)O
ACDLabs 12.01CC(O)C(C1OC(CC(C1N)O)(O)C(O)=O)N
CACTVS 3.385C[C@H](O)[C@H](N)[C@@H]1O[C@@](O)(C[C@H](O)[C@@H]1N)C(O)=O
CACTVS 3.385C[CH](O)[CH](N)[CH]1O[C](O)(C[CH](O)[CH]1N)C(O)=O
FormulaC9 H18 N2 O6
Name5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid
ChEMBL
DrugBank
ZINC
PDB chain6x80 Chain G Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6x80 Atomic structure of the Campylobacter jejuni flagellar filament reveals how epsilon Proteobacteria escaped Toll-like receptor 5 surveillance.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		T182 S183 N346 S348
Binding residue
(residue number reindexed from 1)		T180 S181 N344 S346
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0005576 extracellular region
GO:0009288 bacterial-type flagellum

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6x80, PDBe:6x80, PDBj:6x80
PDBsum6x80
PubMed32641510
UniProtP22251|FLA_CAMJ8 Flagellin A (Gene Name=flaA)

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