Structure of PDB 5v0t Chain G Binding Site BS02

Receptor Information
>5v0t Chain G (length=454) Species: 266265 (Paraburkholderia xenovorans LB400) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRLIIVSNRVAPIPAAGGLAVGVYDALKETGGMWFGWSGDVLSSGQPQIK
VEERGPVTFATIALMRRDYDQYYRGFSNATLWPAFHYRADLLQYDRHDFE
GYWRVNAWLAQQLVPLLREDDVIWVHDYHLIPFAQALRAAGVKNRIGFFL
HIPFPASQVLLAVPPHRELVEALCSFDLLGFQTAPDLRAFCDYIVNEANG
TADPSASGPLTIHAFGRTLRAAAYPIGVYPDEIAELAKAGERGKPVRTMK
ATLHSRKLIMSVDRLDYSKGLVERFRAFERLLEHSTAQRNKVSFLQIAPP
TRADMHAYQDIRLQLEGESGRINGRFAELDWTPILYIHKQYERSVLAALF
RTAHVGYVTPLRDGMNLVAKEYVSAQDPENPGVLVLSRFAGAAQELDGAL
IVNPVDIDGMAEALARALDMPLAERQARHRDMMVQLRENNVSVWRDNFMR
DLQG
Ligand information
Ligand IDG6P
InChIInChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6+/m1/s1
InChIKeyNBSCHQHZLSJFNQ-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)OP(=O)(O)O
ACDLabs 10.04O=P(O)(O)OCC1OC(O)C(O)C(O)C1O
FormulaC6 H13 O9 P
Name6-O-phosphono-alpha-D-glucopyranose;
ALPHA-D-GLUCOSE-6-PHOSPHATE;
6-O-phosphono-alpha-D-glucose;
6-O-phosphono-D-glucose;
6-O-phosphono-glucose
ChEMBL
DrugBankDB02007
ZINCZINC000003875375
PDB chain5v0t Chain G Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5v0t Crystal structure of an alpha,alpha-trehalose-phosphate synthase (UDP-forming) from Burkholderia xenovorans in complex with glucose-6-phosphate
Resolution1.95 Å
Binding residue
(original residue number in PDB)
R18 L32 Y86 D140 R315
Binding residue
(residue number reindexed from 1)
R9 L19 Y73 D127 R302
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) H164 D376
Catalytic site (residue number reindexed from 1) H151 D363
Enzyme Commision number 2.4.1.15: alpha,alpha-trehalose-phosphate synthase (UDP-forming).
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0016757 glycosyltransferase activity
GO:0016758 hexosyltransferase activity
Biological Process
GO:0005992 trehalose biosynthetic process

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Molecular Function

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Biological Process
External links
PDB RCSB:5v0t, PDBe:5v0t, PDBj:5v0t
PDBsum5v0t
PubMed
UniProtQ13W28

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