Structure of PDB 5eix Chain G Binding Site BS02

Receptor Information

>5eix Chain G (length=671) Species: 573 (Klebsiella pneumoniae)

GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW
EVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHI
ATLLCALFVRHFRTLVKEGHVYVALPPLYRIYALVQRFKGLGEMNPMQLR
ETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKERL
ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA
KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLGDGQGNWGA
PKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARL
PNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQ
GPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVITALPHQV
SGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQV
MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR
LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISE
TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLL
KKELQADADAFGDDRRSPLHE

Ligand information

>5eix Chain I (length=12)

gatcatacaacg

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5eix Structure of a quinolone-stabilized cleavage complex of topoisomerase IV from Klebsiella pneumoniae and comparison with a related Streptococcus pneumoniae complex.
• Resolution: 3.35 Å
• Binding residue (original residue number in PDB): K444 N447 H498 R616 R617 Y1018 R1119 I1172 A1173 G1175 M1176
• Binding residue (residue number reindexed from 1): K45 N48 H99 R190 R191 Y210 R308 I361 A362 G364 M365

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 22 12:33:19 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5eix', asym_id = 'G', bs = 'BS02', title = 'Structure of a quinolone-stabilized cleavage com...with a related Streptococcus pneumoniae complex. '

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5eix', asym_id='G', bs='BS02', title='Structure of a quinolone-stabilized cleavage com...with a related Streptococcus pneumoniae complex. ')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003677,0003918,0005524,0005694,0006259,0006265', uniprot = '', pdbid = '5eix', asym_id = 'G'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0003918,0005524,0005694,0006259,0006265', uniprot='', pdbid='5eix', asym_id='G')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>