Structure of PDB 4qpq Chain G Binding Site BS02
Receptor Information
>4qpq Chain G (length=50) Species:
83333
(Escherichia coli K-12) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
AKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHE
Ligand information
>4qpq Chain Q (length=28) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
gcaccgctagcagcgcccctagcggtat
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4qpq
Mechanistic Basis of Plasmid-Specific DNA Binding of the F Plasmid Regulatory Protein, TraM.
Resolution
3.106 Å
Binding residue
(original residue number in PDB)
K3 N5 Y7
Binding residue
(residue number reindexed from 1)
K2 N4 Y6
Binding affinity
PDBbind-CN
: Kd=0.2uM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003677
DNA binding
View graph for
Molecular Function
External links
PDB
RCSB:4qpq
,
PDBe:4qpq
,
PDBj:4qpq
PDBsum
4qpq
PubMed
25284757
UniProt
P10026
|TRAM1_ECOLI Relaxosome protein TraM (Gene Name=traM)
[
Back to BioLiP
]