Structure of PDB 6sgb Chain F1 Binding Site BS02

Receptor Information
>6sgb Chain F1 (length=889) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LEGAMHKPGESGLQAGSSTTIAGKETWSQFSTKMRYGRRRIRVIDVAAKM
SYEYQMLRKMCKRRPAMRQWAVRDDFCDMNPGVVIMSPSMQAAFMKVFRM
KEKGLIRQCLRDIVPVIEYRNREEPARLKRSQAKLRFRIRQRLLKFQRQL
AVANAIASRSVLYSTNDAIGYFLFRGAAMYAGMHRVFFELSKQLPHFVPK
TMLDFGAGTGTAILVAKEVYDPGSLAYPLYRSLRQTMQGNDSSRTHQLSE
LRYDLKRLQRNNEEKKKVRFMAVAALLERGEVDPADLPEDLKREIAEVAT
AAATAKKDRLVREAHARYRDVVDGTEWESGDPLGEVRASTEDPEDVIDGE
QGDGGDDGEAAKGRPKTWWEKLIDVENETARTRAARRLRPLQEVTAVEPS
PGMMEIGTMVLHDDVPNVTWKRYLLPEDEAIQHDLVVAAYSLSEIATSEN
RRRIVQQLWKMTKGVLVFVEFANLNNFNILMEARDWILEEKDVGLWDWQP
TIVAPCPHEHRCPLRHCKTGVKRKRMRICSTEAHYRSTFVEVWARHMPLK
VGIEPISYLILARNELVPERAERRREQLKKAEEMKRRERDVKQQQLHEAS
LAVKDVVFERLSDEALHRVQSSVPQPLTDIDSATSTSLLKDLKDGATSTG
EIGHMPTDVPRLVKTGNTRHNRLIFPLQFPPATHKFNRAFVDAGYQRQRA
ITPAEMLVVRQEVEQLQQRVMRAAPKYLRVVRDPRCHGKVQADFCTPEGD
LVSGRVYRRFYGDRNRVSAHSTMRWQHIGGWKLLKRIRRGSLFPHNVPLY
AVTKHAQIDFPNTLLDTKHSTVEQTAMQYNDPMEISEQQWADAVRRAKIR
TVQHTKNALPFAAKKRAAQRALQVRRRNVRLEMSGNRRR
Ligand information
>6sgb Chain CA (length=609) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
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Receptor-Ligand Complex Structure
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PDB6sgb Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
Resolution3.3 Å
Binding residue
(original residue number in PDB)
P53 S56 G57 L58 M79 R83 R215 A218 K219 R221 F222 R225 Q226 R233 T604 R608 R610 V627 H631 P633 R761 Y787 Q788 R827 G830 K831 Q833 R847 Y849 R850 R851 Y853 K877 Q920 I1001 R1002 Q1005 K1016 K1017 R1018 Q1021 R1022 Q1025 R1027 R1029 N1030 R1032 L1033 E1034
Binding residue
(residue number reindexed from 1)
P8 S11 G12 L13 M34 R38 R130 A133 K134 R136 F137 R140 Q141 R148 T519 R523 R525 V542 H546 P548 R669 Y695 Q696 R735 G738 K739 Q741 R755 Y757 R758 R759 Y761 K785 Q828 I849 R850 Q853 K864 K865 R866 Q869 R870 Q873 R875 R877 N878 R880 L881 E882
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008168 methyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6sgb, PDBe:6sgb, PDBj:6sgb
PDBsum6sgb
PubMed31515389
UniProtQ385R2

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