Structure of PDB 8eai Chain F Binding Site BS02

Receptor Information
>8eai Chain F (length=491) Species: 273057 (Saccharolobus solfataricus P2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFE
WPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEV
PSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFD
IYMKVSSIEVSSEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEAL
ALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT
TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDED
RVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN
INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTL
RKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLE
ALIRISEAYAKMALKAEVTREDAERAINIMRLFLESVGVDM
Ligand information
Ligand ID08T
InChIInChI=1S/C10H15N5O10P2.Be.3FH/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20;;;;/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20);;3*1H/q;+4;;;/p-4/t4-,6-,7-,10-;;;;/m1..../s1
InChIKeyWOGYHYSOODLXII-KWIZKVQNSA-J
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.2[Be](OP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)(F)(F)F
CACTVS 3.370Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[Be](F)(F)F)[C@@H](O)[C@H]3O
CACTVS 3.370Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[Be](F)(F)F)[CH](O)[CH]3O
OpenEye OEToolkits 1.7.2[Be](OP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)(F)(F)F
FormulaC10 H14 Be F3 N5 O10 P2
Name[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium
ChEMBL
DrugBank
ZINC
PDB chain8eai Chain E Residue 703 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8eai Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation.
Resolution2.76 Å
Binding residue
(original residue number in PDB)
E422 R473 P559 R560 E563
Binding residue
(residue number reindexed from 1)
E309 R360 P446 R447 E450
Annotation score4
Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0032508 DNA duplex unwinding

View graph for
Molecular Function

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Biological Process
External links
PDB RCSB:8eai, PDBe:8eai, PDBj:8eai
PDBsum8eai
PubMed36499022
UniProtQ9UXG1|MCM_SACS2 Minichromosome maintenance protein MCM (Gene Name=MCM)

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