Structure of PDB 7ckq Chain F Binding Site BS02
Receptor Information
>7ckq Chain F (length=272) Species:
224308
(Bacillus subtilis subsp. subtilis str. 168) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
DPVRMYLKEIGRVNLLSAKEEIAYAQKIEEGDEESKRRLAEANLRLVVSI
AKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWWIRQAIT
RAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLT
PEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELL
KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQI
EAKALRKLRHPSRSKRLKDFLE
Ligand information
>7ckq Chain 2 (length=37) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
gcatccgtgaaagacctcctcctaggggagagtcaac
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
7ckq
The bacterial multidrug resistance regulator BmrR distorts promoter DNA to activate transcription.
Resolution
4.4 Å
Binding residue
(original residue number in PDB)
W192 R195 Q196 T199 R224 R321 T331 E344 R347
Binding residue
(residue number reindexed from 1)
W93 R96 Q97 T100 R125 R222 T232 E245 R248
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003677
DNA binding
GO:0003700
DNA-binding transcription factor activity
GO:0016987
sigma factor activity
Biological Process
GO:0006352
DNA-templated transcription initiation
GO:0006355
regulation of DNA-templated transcription
GO:0010468
regulation of gene expression
GO:2000142
regulation of DNA-templated transcription initiation
Cellular Component
GO:0005737
cytoplasm
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:7ckq
,
PDBe:7ckq
,
PDBj:7ckq
PDBsum
7ckq
PubMed
33293519
UniProt
P06224
|SIGA_BACSU RNA polymerase sigma factor SigA (Gene Name=sigA)
[
Back to BioLiP
]