Structure of PDB 6yba Chain F Binding Site BS02

Receptor Information
>6yba Chain F (length=910) Species: 10524 (Human adenovirus 41) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMPQWSYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHD
VTTDRSQRLTLRFVPVDREDTAYSYKVRFTLAVGDNRVLDMASTYFDIRG
VLDRGPSFKPYSGTAYNSLAPKTAPNPCEWKDNNKIKVRGQAPFIGTNIN
KDNGIQIGTDTTNQPIYADKTYQPEPQVGQTQWNSEVGAAQKVAGRVLKD
TTPMLPCYGSYAKPTNEKGGQASLITLTSDVNLQFFALPSTPNEPKAVLY
AENVSIEAPDTHLVYKPDVAQGTISSADLLTQQAAPNRPNYIGFRDNFIG
LMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLMLDALGDRSRYFS
MWNQAVDSYDPDVRIIENHGVEDELPNYCFPLGGSAATDTYSGIKANGQT
WTADDNYADRGAEIESGNIFAMEINLAANLWRSFLYSNVALYLPDSYKIT
PDNITLPENKNTYAYMNGRVAVPSALDTYVNIGARWSPDPMDNVNPFNHH
RNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKD
VNMILQSSLGNDLRVDGASVRFDSINLYANFFPMAHNTASTLEAMLRNDT
NDQSFNDYLCAANMLYPIPSNATSVPISIPSRNWAAFRGWSFTRLKTKET
PSLGSGFDPYFTYSGSVPYLDGTFYLNHTFKKVSIMFDSSVSWPGNDRLL
TPNEFEIKRTVDGEGYNVAQCNMTKDWFLIQMLSHYNIGYQGFYVPESYK
DRMYSFFRNFQPMSRQVVNTTTYKEYQNVTLPFQHNNSGFVGYMGPTMRE
GQAYPANYPYPLIGQTAVPSLTQKKFLCDRTMWRIPFSSNFMSMGALTDL
GQNMLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRIHQPHRGVIEA
VYLRTPFSAG
Ligand information
>6yba Chain V (length=29) Species: 10524 (Human adenovirus 41) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
NFASLAPRHGSRPFMGTWNEIGTSQLNGG
Receptor-Ligand Complex Structure
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PDB6yba Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses.
Resolution4.0 Å
Binding residue
(original residue number in PDB)		G17 S21 P48 T49 V50 P52 D55 N617 R649 R845 F896
Binding residue
(residue number reindexed from 1)		G12 S16 P43 T44 V45 P47 D50 N606 R638 R834 F885
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yba, PDBe:6yba, PDBj:6yba
PDBsum6yba
PubMed33627423
UniProtP11820|CAPSH_ADE41 Hexon protein (Gene Name=L3)

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