Structure of PDB 6t1d Chain F Binding Site BS02

Receptor Information

>6t1d Chain F (length=338) Species: 5322 (Pleurotus ostreatus)

CKITATPRQFQPALLSTSKWIWTGENPIPGGSNIISTRPFRKNITAPCGK
CSVCATIVVASDDAHTFYVNGVRIGTGAGFRQGQALFVALQPTWNLFAIA
GQNLVANSPAGIMASILVHFSDGTSETFVTDESWKTLRAAPPENFQLPST
NDSNWPSAAVQGAYQNSVWGPPVLPPVLPLRGSNWIWTSDNVNGAAPVGS
RAFRKTVNQCTKVAVCATVLIAADDRYTLYVNGATVGSGSSYTVADAYTI
PNLHPTFNTFAINATNGGGPAGVIATILITYSDGSNETVVTDASWKAIQT
IPQGFQPPLIDEFGWESAKIIGAFGVAPWGAGMVIPSA

Ligand information

• Ligand ID: GLA
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6+/m1/s1
• InChIKey: WQZGKKKJIJFFOK-PHYPRBDBSA-N
• SMILES:
  CACTVS 3.341: OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@H]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: alpha-D-galactopyranose;
  alpha-D-galactose;
  D-galactose;
  galactose;
  ALPHA D-GALACTOSE
• ChEMBL: CHEMBL1233058
• ZINC: ZINC000000901155
• PDB chain: 6t1d Chain R Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6t1d Structure and properties of the oyster mushroom (Pleurotus ostreatus) lectin.
• Resolution: 2.2 Å
• Binding residue (original residue number in PDB): D259 D260 Y277 G303 P305 P363
• Binding residue (residue number reindexed from 1): D224 D225 Y242 G268 P270 P328
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:6t1d, PDBe:6t1d, PDBj:6t1d
• PDBsum: 6t1d
• PubMed: 31985778
• UniProt: E7E2M2