Structure of PDB 6sw9 Chain F Binding Site BS02

Receptor Information

>6sw9 Chain F (length=229) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIID
VLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIG
HGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGS
VRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAV
FNALYNTNKVVVTPEMIERYGIVVGRAMP

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6sw9 Chain F Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6sw9 Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation.
Resolution	4.2 Å
Binding residue (original residue number in PDB)	C128 H139
Binding residue (residue number reindexed from 1)	C127 H138
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6sw9, PDBe:6sw9, PDBj:6sw9
PDBsum	6sw9
PubMed	32029867
UniProt	Q9V1V5\|RS5_PYRAB Small ribosomal subunit protein uS5 (Gene Name=rps5)

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