Structure of PDB 6o8z Chain F Binding Site BS02

Receptor Information
>6o8z Chain F (length=177) Species: 1351 (Enterococcus faecalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLD
KAVEELALITGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLD
KLVTVSLPRVRDFHGVSKKAFDGRGNYTLGIKEQLIFPEVDYDLVDKVRG
MDIVIVTTANTDEESRELLAQLGMPFQ
Ligand information
>6o8z Chain B (length=116) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugugguggcgauagcgagaaggauacaccuguucccaugccgaacacaga
aguuaagcuucuuagcgccgauuguagugaaggguuucccuuugugagag
uaggacgucgccacgc
<<<<<<<<<....<<<<<<<<.....<<<<<<.............>>>>.
.>>....>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>.....
..>>..>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6o8z Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.49 Å
Binding residue
(original residue number in PDB)		S24 M26 Q27 Q63 K64 L66 K69 T90 R92
Binding residue
(residue number reindexed from 1)		S23 M25 Q26 Q62 K63 L65 K68 T89 R91
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6o8z, PDBe:6o8z, PDBj:6o8z
PDBsum6o8z
PubMed33004869
UniProtA0A1B4XKS2

[Back to BioLiP]