Structure of PDB 6o8x Chain F Binding Site BS02

Receptor Information
>6o8x Chain F (length=176) Species: 1351 (Enterococcus faecalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLD
KAVEELALITGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLD
KLVTVSLPRVRDFHGVSKKAFDGRGNYTLGIKELIFPEVDYDLVDKVRGM
DIVIVTTANTDEESRELLAQLGMPFQ
Ligand information
>6o8x Chain B (length=116) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugugguggcgauagcgagaaggauacaccuguucccaugccgaacacaga
aguuaagcuucuuagcgccgauuguagugaaggguuucccuuugugagag
uaggacgucgccacgc
<<<<<<<<.....<<<<<<<<.....<<<<<<.............>>>>.
.>>....>>>>>>.>>.<<...<...<<<<<<<<...>>>>>>>>....>
..>>...>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6o8x Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.68 Å
Binding residue
(original residue number in PDB)
S23 S24 M26 Q27 Q63 L66 T90 R92
Binding residue
(residue number reindexed from 1)
S22 S23 M25 Q26 Q62 L65 T89 R91
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6o8x, PDBe:6o8x, PDBj:6o8x
PDBsum6o8x
PubMed33004869
UniProtA0A1B4XKS2

[Back to BioLiP]