Structure of PDB 6d9k Chain F Binding Site BS02

Receptor Information
>6d9k Chain F (length=755) Species: 349102 (Cereibacter sphaeroides ATCC 17025) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RQLVSNGFEVNLPDQVEVIVRDLPDPSKVKEERTRLMGYWFVHWFDGKLF
HLRIKAGGPNVDGEHRAIRTAEHPWLLRARLDDALEEALPKYAAVKKRPF
TFLAQKDELIDAAATAAGLSHRLLNSFKVIPRFALSPKIYEPVDGTTRVG
VFVTIGMRYDIEASLRDLLEAGIDLRGMYVVRRKRQRGLLGRVRAISDDM
VQLFEETDLASVNVNDAKLEGSKENFTRCLSALLGHNYKKLLNALDDQEA
GYRTGPRFDDAVRRMGEFLAKKPIRLADNINAQVGDRIVFSNEGQARNVR
LAPKVEYVFDRTGAKSAEYAWRGLSQFGPFDRPSFANRSPRILVVYPSST
QGKVENFLSAFRDGMGSNYSGFSKGFVDLMGLTKVEFVMCPVEVSSADRN
GAHTKYNSAIEDKLAGAGEVHAGIVVLFEDHARLPDDRNPYIHTKSLLLT
LGVPTQQVRMPTVLLEPKSLQYTLQNFSIATYAKLNGTPWTVNHDKAIND
ELVVGMGLAELSGSRTEKRQRFVGITTVFAGDGSYLLGNVSKECEYEGYS
DAIRESMTGILRELKKRNNWRPGDTVRVVFHAHRPLKRVDVASIVFECTR
EIGSDQNIQMAFVTVSHDHPFVLIDRSERGLEAYKGSTARKGVFAPPRGA
ISRVGRLTRLLAVNSPQLIKRANTPLPTPLLVSLHPDSTFKDVDYLAEQA
LKFTSLSWRSTLPAATPVTIFYSERIAELLGRLKSIPNWSSANLNIKLKW
SRWFL
Ligand information
Receptor-Ligand Complex Structure
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PDB6d9k Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		P45 R52 H62 W63 R97 K157 E246 T249 Y260 Y329 Y341 Y494 A531 E532 R541 H605 R606 S638 D640 Q689 L690
Binding residue
(residue number reindexed from 1)		P26 R33 H43 W44 R78 K138 E224 T227 Y238 Y307 Y319 Y472 A509 E510 R519 H583 R584 S616 D618 Q667 L668
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004520 DNA endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0044355 clearance of foreign intracellular DNA

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Molecular Function
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Biological Process
External links
PDB RCSB:6d9k, PDBe:6d9k, PDBj:6d9k
PDBsum6d9k
PubMed29996105
UniProtA4WYU7|AGO_CERS5 Protein argonaute (Gene Name=ago)

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