Structure of PDB 5x8p Chain F Binding Site BS02

Receptor Information
>5x8p Chain F (length=175) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDA
AINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDR
LINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGM
DVCITTTAKTDKEAYKLLSLMGMPF
Ligand information
>5x8p Chain A (length=2809) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucaaacgaggaaaggcuuacgguggauaccuaggcacccagagacgagga
agggcguauuaaucgacgaaaugcuucggggaguugaaaauaagcagaga
uccggagauucccgaauaggucaaccuuucgaacuucugcugaauccaug
ggcaggcaagagacaaccuggcgaacugaaacaucuuaguagccagagga
aaagaaagcaaaagcgauucccguaguagcggcgagcgaaaugggagcag
ccuaaaccgugaaaacgggguugugggagagcaauacaagcgucgugcug
cuaggcgaaucaguggagugcggaacccuagauggugaaaguccaguagc
cgaaagcaucacuagcuuaugcucugacccgaguagcauggggcacgugg
aaucccgugugaaucagcaaggaccaccuugcaaggcuaaauacuccugg
gugaccgauagcgaaguaguaccgugagggaagggugaaaagaaccccca
ucggggagugaaauagaacaugaaaccguaagcucucaagcagugggagg
gggaccagacccugaccgcgugccuguugaagaaugagccggcgacucau
aggcaguggcuugguuaagggaacccaccggagccguagcgaaagcgagu
cuucauagggcaauugucacugcuuauggacccgaaccugggugaucuau
ccaugaccaggaugaagcuugggugaaacuaaguggagguccgaaccgac
ugauguugaagaaucagcggaugaguugugguuaggggugaaaugccacu
cgaacccagagcuagcugguucuccccgaaaugcguugaggcgcagcagu
ugacuggacaucuagggguaaagcacuguuucggugcgggccgcgagagc
gguaccaaaucgaggcaaacucugaauacuagauaugaccuccaaauaac
aggggucaaggucggccagugagacgaugggggauaagcuucaucgucga
gagggaaacagcccggaucaccagcuaaggccccuaaaugaccgcucagu
gauaaaggagguaggggugcagagacagccaggagguuugccuagaagca
gccacccuugaaagagugcguaauagcucacugaucgagcgcucuugcgc
cgaagaugaacggggcuaagcggucugccgaagcugugggauguaaaaaa
acaucgguaggggagcguuccguguuagggagaaacgcgugcgugagccg
cguuggacgaagcggaagcgagaaugucggcuugaguaacgcaaacauug
gugagaauccaaugccccgaaaaccuaaggguuccuccgcaagguucguc
cacggagggugagucagggccuaagaucaggccgaaaggcguagucgaug
gacaacaggugaauauuccuguacuaccccuuguuggucccgagggacgg
aggaggcuagguuagccgaaagaugguuaucgguucaaggacgcaaggug
acccuguuuuucaggguaagaagggguagagaaaaugccucgagccaaug
uucgaguaccaggcgcuacggcgcugaaguaaccgaugccauacucccag
gaaaagcucgaacgaccuucaacaaaaggguaccuguacccgaaaccgac
acagguagguagguagagaauaccuaggggcgcgagacaacucucucuaa
ggaacucggcaaaauagccccguaacuucgggagaaggggugcccccuca
caaagggggucgaagugaccaggcccgggcgacuguuuaccaaaaacaca
ggucuccgcaaagucguaagaccauguaugggggcugacgccugcccagu
gccggaaggucaaggaaguuggugaccugaugacaggggagccggcgacc
gaagccccggugaacggcggccguaacuauaacgguccuaagguagcgaa
auuccuugucggguaaguuccgacccgcacgaaaggcguaacgaucuggg
cacugucucggagagaggcucggugaaauagacaugucugugaagaugcg
gacuaccugcaccuggacagaaagacccuaugaagcuuuacuguucccug
ggauuggcuuugggcuuuuccugcgcagcuuagguggaaggcgaagaagg
cccccuuccgggggggcccgagccaucagugagauaccacucuggaagag
cuagaauucuaaccuugugucaggaccuacgggccaagggacauucucag
guagacaguuucuauggggcguaggccucccaaaagguaacggaggcgug
caaagguuuccucgggccggacggagauuggcccucgagugcaaaggcag
aagggagcuugacugcaagacccacccgucgagcagggacgaaagucggc
cuuagugauccgacggugccgaguggaagggccgucgcucaacggauaaa
aguuacucuagggauaacaggcugaucuuccccaagaguucacaucgacg
ggaagguuuggcaccucgaugucggcucuucgccaccuggggcuguagua
uguuccaaggguugggcuguucgcccauuaaagcgguacgugagcugggu
ucagaacgucgugagacaguucgguccauauccggugugggcguuagagc
auugagaggaccuuucccuaguacgagaggaccgggaaggacgcaccucu
gguguaccaguuaucgugcccacgguaaacgcuggguagccaagugcgga
gcggauaacugcugaaagcaucuaaguaguaagcccaccccaagaugagu
gcucuccua
.............<<<<<<<<<<.....<<..<<<<<<<<<<<.<.....
.<<<<<<.....((.>>>.....<<<<<<<..<<.))......>>.....
>>>>>>>...>>>....<<<....>>>......<<<<<<<<.........
>>>>>..>>>.>....<<<<<<.....<<....>>......>>>>>.>..
.......<<....>>..<<<<<<.....<<.....>>....>>>>>>..<
<<....<<<<....>>>>......<<<<<<<<<....<<<<...<<<.<<
<<.<<<...<<.<<.....>>.>>((......<<<.....))>>>...>>
>...>>>>.>>>..>>>>.>>>>>>..>>>.....<<<<<<<<.......
..>>>>>>>>......<<<<<..<<<<>>>>>..>>>......>>.>>>>
>>>.>>...............<<....>>....>>.........<<<<..
..>>>>..................>>>>>>>>>>........<<<<..<<
<<.......>>>>..>>>>...<.<........>.>.<<<<<<....<<<
<<<<<<<<<...<<<...<<.......>>...>>>...<<....>>..<<
<<.....>>>>.....>>>>>>>>>>>>..<<.<...<<<<<<.....<.
<<<<<<<..<<<....<<<<<<......>>>>>>.....>>>...<<<.<
<<<<........>>>>>>>>....>>>>>>>.>...<<<.....>>>...
...>>>>>>......>.>>..<<<<<<....<<<<<....>>>>><<.<<
<<<<<....<<<<<<.....<<<...<<<<<<<<...<<<<<........
>>>.>>...>>>>>>>>..>>.>.....>>>>>>..<<<<<<........
.>>>>>>..>>>>>>>..>>..<<<<<<<<<<......>>>>>>>>>>..
..<<<......>>>...<<<<.<<<...<<<(((.....<<<<<<.....
......<<..<<<<<<<<<<.........<<<.<<....<<.........
>>....>>.........<<......>>...>>>.....>>>>>>>>>>.>
>..........))).....>>>>>>.>>>...>>>>>>><<<<<......
>>>>>....>>>>>><.<<<<<<...........<<<<<.<<....>>>>
>>.>.......>>>>>>..>.....>>>>>><......<<.....<<<<<
<.......>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>
>.>>>>>>....((<<<<.<<...<<<...<<<....>>>...>>>...>
>...<<<<<........>>>>>))<<<<<.<<<<.<<<<.<<<<....<<
<<..<<<..<<<<<<<<<<.....(((..>>>>>....<<<<<...<<<.
<<<<<<.....>>>>>>.....<<<<<<.......>>>>>>..>>>..>>
>>>.....<..<<<<<....>>>>>...>>>>>>...>>>...>>>>...
......>>>>...>>>>....>>>>..>>>>>>>>>..>>.....<<...
...>>>>>>>.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<
<.........<.....<<<<<....<....>.....>>>>><<<<<<<..
...>>>>>>>............<<<<<<<<<..<<<.........>>>..
<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.<<<..<<
<<<<<..<<<...<<..<<<<<<..<<<<....>>>>...>>>>>>..>>
...>>>>>>>>..>>>>><<<<<<.......>>>>>>........<....
.......<<<<<<.....>>>>>>.....>....>>>>>..>>.>>>>>>
>..>..>>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>
>>>..<<<<<<<<.<<<..<......<<<<.<<<<<<..<<<<<..<<<<
<<<..<<.<<<.<<<<<<<<..............<<<..<<<......<<
<<<<.......>.>>>>>...>>>............>>>.....>>>>>>
>>.>>>.>>...<<<<<.<<<..........>>>>>>>>.....>>>>>>
>...>>>>>..<<<<.....>>>><<<<<<...........>>>>>>..<
<...<<<<<<<..<<<<<<<.......>>>>>>>....<<...(((>>..
..>>>>>>>...<<<<..<<<......>>>..>>>>.<<<....>>>.>>
))).......<<<<<<<.<<..>>>>..>>>>>>>>>.............
>>>>..>>>>>>.......<<<<.<.<<<<<<...<<.......>>...>
>>>>>...>>>>.>.......<<<<<...<<<<..<<<<<<<<.......
.>>>>>..>>>.<<<<<.....>>>>>.....>>>>.......>>>>>..
...<<<<<<<....>>>.>>>>....>...>>>>>>>>>>>....<<<<<
<<...<.<<..<<<<<<<...............>>>>>>>.<<<<<...<
<<<...<<<<<<<<<<<))).>>>>>>...>>>>>...>>>>.>>>>>..
<.<<...<<<<<<...........>>>>>>...>>>.>>.>.......>>
>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5x8p Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation
Resolution3.4 Å
Binding residue
(original residue number in PDB)
K86 V88 N90 G92 G94 K124 I127 F130 L138 S174 F175 H178 G179 N180 F185 R186 D206
Binding residue
(residue number reindexed from 1)
K31 V33 N35 G37 G39 K69 I72 F75 L83 S119 F120 H123 G124 N125 F130 R131 D151
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5x8p, PDBe:5x8p, PDBj:5x8p
PDBsum5x8p
PubMed28582576
UniProtP82192|RK5_SPIOL Large ribosomal subunit protein uL5c (Gene Name=RPL5)

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