Structure of PDB 5u91 Chain F Binding Site BS02

Receptor Information

>5u91 Chain F (length=320) Species: 32630 (synthetic construct)

EVRKNLMDVFRDRPAFSEHTWEMLLSVCRSWAAWCKLNNRKWFPAEPEDV
RDYLLHLQARGLAVKTIQQHLCRLNMLHRRSGLPRPSDSNAVSLVMRRIR
KENVDAGERTKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGVAYNTL
LRIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLV
ERWISVSGVADDPNNYLFCRVRRYGVAAPSATSQLSTYALQRIFEATHRL
IYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTTVNSV
MNFIRNLDSETGAMVRLLED

Ligand information

>5u91 Chain H (length=37)

ggccatgttggcatatagggtgtaataggatgttgtc

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5u91 Crystal structure of an engineered, HIV-specific recombinase for removal of integrated proviral DNA.
• Resolution: 3.104 Å
• Binding residue (original residue number in PDB): F37 S38 H40 T41 Q89 Q90 N96 R106 R118 R121 I174 A175 K201 R243 Y245 V247 Y259 R282 Y283 S287 G288 H289
• Binding residue (residue number reindexed from 1): F16 S17 H19 T20 Q68 Q69 N75 R85 R97 R100 I153 A154 K180 R222 Y224 V226 Y238 R261 Y262 S266 G267 H268

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 22:43:16 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5u91', asym_id = 'F', bs = 'BS02', title = 'Crystal structure of an engineered, HIV-specific recombinase for removal of integrated proviral DNA.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5u91', asym_id='F', bs='BS02', title='Crystal structure of an engineered, HIV-specific recombinase for removal of integrated proviral DNA.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003677,0006310,0015074', uniprot = '', pdbid = '5u91', asym_id = 'F'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0006310,0015074', uniprot='', pdbid='5u91', asym_id='F')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>