Structure of PDB 5tsh Chain F Binding Site BS02

Receptor Information
>5tsh Chain F (length=382) Species: 269799 (Geobacter metallireducens GS-15) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DAPVVKLVNLILTDAIKRKASDIHIEPYERSFRVRYRIDGVLYEVMKPPL
KLKNAITSRIKIMAELDIAERRLPQDGRIKIKMDYRVSVLPTLFGEKVVL
RLLDKSNLQLDMTKLGYEPDALHYFKEAIHKPFGMVLVTGPTGSGKTVSL
YSALGELNKTTENISTAEDPVEFNFAGINQVQMHEDIGLNFAAALRSFLR
QDPDIIMIGEIRDFETAEIAIKAALTGHLVLSTLHTNDAPATINRLLNMG
VEPFLVASAVNLITAQRLARRVCSECKQPEEIPIQALIDAGVSPDEGPSY
VCYKGTGCVKCNNTGYKGRVGFYQVMPMLEEIRELILNGANTAEIKRESM
RLGIKTMRQSGLTKLKEGVTSFEEVLRVTVAD
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain5tsh Chain F Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5tsh The molecular mechanism of the type IVa pilus motors.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		T327 G328 S329 G330 K331 T332 V333
Binding residue
(residue number reindexed from 1)		T142 G143 S144 G145 K146 T147 V148
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016887 ATP hydrolysis activity
GO:0046872 metal ion binding
Biological Process
GO:0009297 pilus assembly
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5tsh, PDBe:5tsh, PDBj:5tsh
PDBsum5tsh
PubMed28474682
UniProtQ39VU7

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