Structure of PDB 5fph Chain F Binding Site BS02

Receptor Information
>5fph Chain F (length=394) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NNDLPSSFTGYFKKFNTGEEIISQEILNLIELRMRKGNIQLTNSAISDAL
KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVTMERHPY
KHPNIPNVVFWDLPGIGSTNFPPNTYLEKMKFYEYDFFIIISATRFKKND
IDIAKAISMMKEEFYFVRTKVDSDITNEADGTFDKEKVLQDIRLNCVNTF
RENGIAEPPIFLLSNKNVCHYDFPVLMDELISDLPIYKRHNFMVSLPNIT
DSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYR
TVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDTIQERLSRYIQE
FCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5fph Chain F Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5fph The Immunity-Related Gtpase Irga6 Dimerizes in a Parallel Head-to-Head Fashion.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		S83 D126
Binding residue
(residue number reindexed from 1)		S71 D112
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.5.-
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0016787 hydrolase activity
GO:0019003 GDP binding
GO:0042802 identical protein binding
Biological Process
GO:0009617 response to bacterium
GO:0010506 regulation of autophagy
GO:0019221 cytokine-mediated signaling pathway
GO:0035458 cellular response to interferon-beta
GO:0042832 defense response to protozoan
GO:0045087 innate immune response
GO:0050829 defense response to Gram-negative bacterium
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0016020 membrane
GO:0020005 symbiont-containing vacuole membrane
GO:0031965 nuclear membrane
GO:0032580 Golgi cisterna membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5fph, PDBe:5fph, PDBj:5fph
PDBsum5fph
PubMed26934976
UniProtQ9QZ85|IIGP1_MOUSE Interferon-inducible GTPase 1 (Gene Name=Iigp1)

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