Structure of PDB 5dqu Chain F Binding Site BS02
Receptor Information
>5dqu Chain F (length=92) Species:
83333
(Escherichia coli K-12) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
SMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLA
EEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLP
Ligand information
>5dqu Chain I (length=15) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
gagtcgatgcttttt
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5dqu
Structural and Mechanistic Basis of PAM-Dependent Spacer Acquisition in CRISPR-Cas Systems.
Resolution
4.5 Å
Binding residue
(original residue number in PDB)
N10 A28
Binding residue
(residue number reindexed from 1)
N9 A27
Enzymatic activity
Enzyme Commision number
3.1.-.-
Gene Ontology
Molecular Function
GO:0003677
DNA binding
GO:0004519
endonuclease activity
GO:0005515
protein binding
Biological Process
GO:0043571
maintenance of CRISPR repeat elements
GO:0051607
defense response to virus
GO:0099048
CRISPR-cas system
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:5dqu
,
PDBe:5dqu
,
PDBj:5dqu
PDBsum
5dqu
PubMed
26478180
UniProt
P45956
|CAS2_ECOLI CRISPR-associated endoribonuclease Cas2 (Gene Name=ygbF)
[
Back to BioLiP
]