Structure of PDB 4udk Chain F Binding Site BS02

Receptor Information

>4udk Chain F (length=320) Species: 155900 (uncultured organism)

IIPWEERPAGCKDVLWRSVANPIIPRDLLPTSNSIFNSAVVPFGDGFAGV
FRCDDTSRRMRLHVGFSKDAINWNIKEEPLKFQCDDEEIGTWVYGYDPRV
CFIEDRYYVTWCNGYHGPTIGVAYTFDFETFHQLENAFIPFNRNGVLFPR
KINGRFAMLSRPSDNGHTPFGDIFYSESPDMEFWGRHRHVMSPAAFEVSA
WQCTKIGAGPIPVETPEGWLLIYHGVLHSCNGYVYSFGSALLDLDEPWKV
KFRSGPYLLAPREPYECMGDVPNVCFPCAALHDNETGRIAIYYGCADTVT
GLAFGYIPEIIEFTKRTSII

Ligand information

• Ligand ID: BMA
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-RWOPYEJCSA-N
• SMILES:
  CACTVS 3.341: OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-mannopyranose;
  beta-D-mannose;
  D-mannose;
  mannose
• ZINC: ZINC000003830679
• PDB chain: 4udk Chain F Residue 329

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4udk Structural Bases for N-Glycan Processing by Mannoside Phosphorylase.
• Resolution: 1.76 Å
• Binding residue (original residue number in PDB): D104 Y242 F283 D304
• Binding residue (residue number reindexed from 1): D97 Y235 F276 D297
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 2.4.1.-

Gene Ontology

Molecular Function

• GO:0016740 transferase activity

External links

• PDB: RCSB:4udk, PDBe:4udk, PDBj:4udk
• PDBsum: 4udk
• PubMed: 26057673
• UniProt: D9ZDQ9