Structure of PDB 1n8r Chain F Binding Site BS02
Receptor Information
>1n8r Chain F (length=140) Species:
2238
(Haloarcula marismortui) [
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FHEMREPRIEKVVVHMGIGHANAEDILGEITGQMPVRTKAKRTVGEFDIR
EGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGLDVTVNL
VRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV
Ligand information
>1n8r Chain B (length=122) [
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uuaggcggccacagcggugggguugccucccguacccaucccgaacacgg
aagauaagcccaccagcguuccggggaguacuggagugcgcgagccucug
ggaaacccgguucgccgccacc
...<<<<<<....<<<<<<<<......<<<<<...............>>>
..>>....>>>>>>.>><..<<<<<.....<<<<<<.<<....>>>>>>>
>....>>>>>.>.>>>>>>...
Receptor-Ligand Complex Structure
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PDB
1n8r
Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit
Resolution
3.0 Å
Binding residue
(original residue number in PDB)
E12 M13 R14 R17 M48 V50 R51 K72 V73 T74 R76 P137 G138 R140 V141 R144 D145 R149 P152 K154 H155
Binding residue
(residue number reindexed from 1)
E3 M4 R5 R8 M34 V36 R37 K58 V59 T60 R62 P103 G104 R106 V107 R110 D111 R115 P118 K120 H121
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000049
tRNA binding
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
GO:0019843
rRNA binding
Biological Process
GO:0006412
translation
Cellular Component
GO:0005840
ribosome
GO:0022625
cytosolic large ribosomal subunit
GO:1990904
ribonucleoprotein complex
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Molecular Function
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Cellular Component
External links
PDB
RCSB:1n8r
,
PDBe:1n8r
,
PDBj:1n8r
PDBsum
1n8r
PubMed
12860128
UniProt
P14124
|RL5_HALMA Large ribosomal subunit protein uL5 (Gene Name=rpl5)
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