Structure of PDB 1kc8 Chain F Binding Site BS02

Receptor Information
>1kc8 Chain F (length=140) Species: 2238 (Haloarcula marismortui) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FHEMREPRIEKVVVHMGIGHANAEDILGEITGQMPVRTKAKRTVGEFDIR
EGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGLDVTVNL
VRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV
Ligand information
>1kc8 Chain B (length=122) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuaggcggccacagcggugggguugccucccguacccaucccgaacacgg
aagauaagcccaccagcguuccggggaguacuggagugcgcgagccucug
ggaaacccgguucgccgccacc
...<<<<<<....<<<<<<<<......<<<<<...............>>>
..>>....>>>>>>.>><..<<<<<.....<<<<<<.<<....>>>>>>>
>....>>>>>.>.>>>>>>...
Receptor-Ligand Complex Structure
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PDB1kc8 Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit
Resolution3.01 Å
Binding residue
(original residue number in PDB)
E12 M13 R14 M48 V50 R51 T74 R76 P137 G138 R140 V141 K143 R144 D145 R149 P152 K154 H155
Binding residue
(residue number reindexed from 1)
E3 M4 R5 M34 V36 R37 T60 R62 P103 G104 R106 V107 K109 R110 D111 R115 P118 K120 H121
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Biological Process

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Cellular Component
External links
PDB RCSB:1kc8, PDBe:1kc8, PDBj:1kc8
PDBsum1kc8
PubMed12860128
UniProtP14124|RL5_HALMA Large ribosomal subunit protein uL5 (Gene Name=rpl5)

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