BioLiP

Receptor Information

>8s9v Chain E (length=678) Species: 1148 (Synechocystis sp. PCC 6803) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SNFHNPYNFVPALPRDGITGDLGDCAPAGHSYYHGDKYSGRIAVKLTTVT
PLLIPDASKEEINNNHKTYPVRIGKDGKPYLPPTSIKGMLRSAYEAVTNS
RLAVFEDHDSRLAYRMPATMGLQMVPARIEGDNIVLYPGTSRIGNNGRPA
NNDPMYAAWLPYYQNRIAYQMAEHGDHVRFWAERYTRGNFCYWRVRQIAR
HNQNLGNRPERGRNYGQHHSTGVIEQFEGFVYKTNKNIGNKHDERVFIID
RESIEIPLSRDLRRKWRELITSYQEIHKKEVDRGDTGPSAVNGAVWSRQI
IADESERNLSDGTLCYAHVKKEDGQYKILNLYPVMITRGLYEIAPVDLLD
ETLKPATDKKQLSPADRVFGWVNQRGNGCYKGQLRIHSVTCQHDDAIDDF
GNQNFSVPLAILGQPKPEQARFYCADDRKGIPLEDGYDRDDGYSDSEQGL
RGRKVYPHHKGLPNGYWSNPTEDRSQQAIQGHYQEYRRPKKDGLEQRDDQ
NRSVKGWVKPLTEFTFEIDVTNLSEVELGALLWLLTLPDLHFHRLGGGKP
LGFGSVRLDIDPDKTDLRNGAGWRDYYGSLLETSQPDFTTLISQWINAFQ
TAVKEEYGSSSFDQVTFIKASGQSLQGFHDNASIHYPRSTPEPKPDGEAF
KWFVANEKGRRLALPALEKSQSFPIKPS

>8s9v Chain G (length=34) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

uauugacgaccccgauugguucuacuacaguuuc

..................................

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	8s9v RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Resolution	3.0 Å
Binding residue (original residue number in PDB)	A229 L233 N357 K396 S406 A407 V489 N490 Q491 G493 N494 Q617 E765 F767 K775
Binding residue (residue number reindexed from 1)	A118 L122 N240 K279 S289 A290 V372 N373 Q374 G376 N377 Q500 E648 F650 K658

Enzyme Commision number

	Biological Process
GO:0051607	defense response to virus

PDB	RCSB:8s9v, PDBe:8s9v, PDBj:8s9v
PDBsum	8s9v
PubMed	38637512
UniProt	Q6ZED5

[Back to BioLiP]

Structure of PDB 8s9v Chain E Binding Site BS02