Structure of PDB 7ypp Chain E Binding Site BS02

Receptor Information
>7ypp Chain E (length=162) Species: 947166 (Ramazzottius varieornatus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LFRGPVTAVAAIAGEGEHAGIKGSLTFLQKSLDGRTVINGTISGLPEGKH
GLHIVDSGDMTKGCYITTAKGHLNPFNLSHGAPSDSARHVGDLGNIYADD
TGISVINLTDTVISLFPTPAFVIGRILVIHTTYDDLGRGGSPVSKVNGNA
GGRLACGIISYV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7ypp Chain E Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7ypp Structure of a superoxide dismutase from a tardigrade: Ramazzottius varieornatus strain YOKOZUNA-1.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		H104 H112 H121 D124
Binding residue
(residue number reindexed from 1)		H72 H80 H89 D92
Annotation score1
Enzymatic activity
Enzyme Commision number 1.15.1.1: superoxide dismutase.
Gene Ontology
Molecular Function
GO:0005507 copper ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006801 superoxide metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7ypp, PDBe:7ypp, PDBj:7ypp
PDBsum7ypp
PubMed37358501
UniProtA0A1D1VU85|SODC_RAMVA Superoxide dismutase [Cu-Zn] (Gene Name=RvY_13070)

[Back to BioLiP]