Structure of PDB 7dbp Chain E Binding Site BS02

Receptor Information
>7dbp Chain E (length=97) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS
AVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Ligand information
>7dbp Chain J (length=175) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tttcaatacatgcacaggatgtatatatctgacacgtgcctggagactag
ggagtaatccccttggcggttaaaacgcgggggacagcgcgtacgtgcgt
ttaagcggtgctagagctgtctacgaccaattgagcggcctcggcaccgg
gattctccagggcggccgcgtaagt
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7dbp Linker histone defines structure and self-association behaviour of the 177 bp human chromatosome.
Resolution4.5 Å
Binding residue
(original residue number in PDB)		R40 T45 R63 R72 F84 T118
Binding residue
(residue number reindexed from 1)		R3 T8 R26 R35 F47 T81
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0045296 cadherin binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0006334 nucleosome assembly
GO:0010467 gene expression
GO:0032200 telomere organization
GO:0040029 epigenetic regulation of gene expression
Cellular Component
GO:0000786 nucleosome
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0016020 membrane
GO:0032991 protein-containing complex
GO:0070062 extracellular exosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7dbp, PDBe:7dbp, PDBj:7dbp
PDBsum7dbp
PubMed33432055
UniProtP68431|H31_HUMAN Histone H3.1 (Gene Name=H3C1)

[Back to BioLiP]