Structure of PDB 6y0x Chain E Binding Site BS02

Receptor Information
>6y0x Chain E (length=89) Species: 305 (Ralstonia solanacearum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSVQTAATSWGTVPSIRVYTANNGKITERCWDGKGWYTGAFNEPGDNVSV
TSWLVGSAIHIRVYASTGTTTTEWCWDGNGWTKGAYTAT
Ligand information
Ligand IDZDC
InChIInChI=1S/C8H14O6/c1-3-6(11)8(13)7(12)4(14-3)2-5(9)10/h3-4,6-8,11-13H,2H2,1H3,(H,9,10)/t3-,4-,6+,7+,8+/m0/s1
InChIKeyYTZUDUWVQZSKNN-OASCRQMUSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)CC1OC(C(O)C(O)C1O)C
OpenEye OEToolkits 1.7.6CC1C(C(C(C(O1)CC(=O)O)O)O)O
CACTVS 3.370C[C@@H]1O[C@@H](CC(O)=O)[C@@H](O)[C@H](O)[C@@H]1O
CACTVS 3.370C[CH]1O[CH](CC(O)=O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)CC(=O)O)O)O)O
FormulaC8 H14 O6
Name3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid
ChEMBL
DrugBank
ZINCZINC000166514822
PDB chain6y0x Chain D Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6y0x Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution
Resolution2.425 Å
Binding residue
(original residue number in PDB)		W31 W36
Binding residue
(residue number reindexed from 1)		W31 W36
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6y0x, PDBe:6y0x, PDBj:6y0x
PDBsum6y0x
PubMed
UniProtA0A0S4TLR1

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