Structure of PDB 6b0x Chain E Binding Site BS02

Receptor Information
>6b0x Chain E (length=284) Species: 53369 (Dubowvirus dv80alpha) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTF
WADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQ
FFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFT
QDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDS
LDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKN
EDGTPVNLFEQDMVALRATMHVALHIADDKAFAK
Ligand information
>6b0x Chain f (length=16) Species: 53369 (Dubowvirus dv80alpha) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
PQNLAEIARQKRIIKN
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6b0x Competing scaffolding proteins determine capsid size during mobilization ofStaphylococcus aureuspathogenicity islands.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		N54 P132 K235
Binding residue
(residue number reindexed from 1)		N29 P107 K210
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6b0x, PDBe:6b0x, PDBj:6b0x
PDBsum6b0x
PubMed28984245
UniProtA4ZFB3|CAPSD_BP80A Major capsid protein (Gene Name=gp47)

[Back to BioLiP]