Structure of PDB 6az0 Chain E Binding Site BS02

Receptor Information

>6az0 Chain E (length=439) Species: 285006 (Saccharomyces cerevisiae RM11-1a) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KFDDVCGCDEARAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKT
LLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIF
IDQLDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEA
LDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARG
TPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMV
LTDAARKATAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEM
DKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARA
MVTQYGMSDDVGPVNLSEEWESWSNKIRDIADNEVIELLKDSEERARRLL
TKKNVELHRLAQGLIEYETLDAHEIEQVCKGEKLAKLKT

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6az0 Chain E Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6az0 Structure of the mitochondrial inner membrane AAA+ protease YME1 gives insight into substrate processing.
Resolution	3.4 Å
Binding residue (original residue number in PDB)	H540 H544 D618
Binding residue (residue number reindexed from 1)	H262 H266 D340
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004176	ATP-dependent peptidase activity
GO:0004222	metalloendopeptidase activity
GO:0005524	ATP binding
GO:0016887	ATP hydrolysis activity

	Biological Process
GO:0006508	proteolysis

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Molecular Function

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Biological Process

External links

PDB	RCSB:6az0, PDBe:6az0, PDBj:6az0
PDBsum	6az0
PubMed	29097521
UniProt	B3LL85

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