Structure of PDB 5yb3 Chain E Binding Site BS02

Receptor Information
>5yb3 Chain E (length=36) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
Ligand information
>5yb3 Chain G (length=23) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ELTWEEWEKKIEEYTKKIEEILK
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5yb3 Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Resolution2.043 Å
Binding residue
(original residue number in PDB)
A50 Q51 H53 L54 L57 W60
Binding residue
(residue number reindexed from 1)
A16 Q17 H19 L20 L23 W26
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5yb3, PDBe:5yb3, PDBj:5yb3
PDBsum5yb3
PubMed29535974
UniProtP04578|ENV_HV1H2 Envelope glycoprotein gp160 (Gene Name=env)

[Back to BioLiP]