Structure of PDB 5cpj Chain E Binding Site BS02

Receptor Information
>5cpj Chain E (length=97) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS
AVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Ligand information
>5cpj Chain J (length=146) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atcagattccattcgaatccattcgaaaatgattacattcgaatccattc
gaagattccatttgagcctgttcgaaaattccatttgagtccaaccaatg
attccattcatttccattcaatgattccattcgaatccatttggat
Receptor-Ligand Complex Structure
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PDB5cpj Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.
Resolution3.15 Å
Binding residue
(original residue number in PDB)		H39 R42 T45 R63 R72 R83 F84 Q85 R116 V117 M120
Binding residue
(residue number reindexed from 1)		H2 R5 T8 R26 R35 R46 F47 Q48 R79 V80 M83
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0045296 cadherin binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0006334 nucleosome assembly
GO:0010467 gene expression
GO:0032200 telomere organization
GO:0040029 epigenetic regulation of gene expression
Cellular Component
GO:0000786 nucleosome
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0016020 membrane
GO:0032991 protein-containing complex
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5cpj, PDBe:5cpj, PDBj:5cpj
PDBsum5cpj
PubMed26446621
UniProtP68431|H31_HUMAN Histone H3.1 (Gene Name=H3C1)

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