Structure of PDB 4ogq Chain E Binding Site BS02

Receptor Information
>4ogq Chain E (length=31) Species: 103690 (Nostoc sp. PCC 7120 = FACHB-418) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLAIVAYIGFLALFTGIAAGLLFGLRSAKIL
Ligand information
Ligand ID3WM
InChIInChI=1S/C39H76O5/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-38(41)43-36-37(35-40)44-39(42)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h19-22,37-42H,3-18,23-36H2,1-2H3/b21-19-,22-20+/t37-,38+,39-/m0/s1
InChIKeyOBURSNHVDFVKSA-YKKXEANNSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCCCC\C=C/CCCCCC[C@H](O)OC[C@H](CO)O[C@H](O)CCCCCC/C=C/CCCCCCCCC
ACDLabs 12.01OC(OC(COC(O)CCCCCC\C=C/CCCCCCCCC)CO)CCCCCC/C=C/CCCCCCCCC
OpenEye OEToolkits 1.7.6CCCCCCCCCC=CCCCCCCC(O)OCC(CO)OC(CCCCCCC=CCCCCCCCCC)O
OpenEye OEToolkits 1.7.6CCCCCCCCC/C=C\CCCCCC[C@H](O)OC[C@H](CO)O[C@@H](CCCCCC/C=C/CCCCCCCCC)O
CACTVS 3.385CCCCCCCCCC=CCCCCCC[CH](O)OC[CH](CO)O[CH](O)CCCCCCC=CCCCCCCCCC
FormulaC39 H76 O5
Name(1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-hydroxypropane-1,2-diyl]bis(oxy)}bisoctadec-8-en-1-ol
ChEMBL
DrugBank
ZINCZINC000098208471
PDB chain4ogq Chain E Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4ogq Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome b6f Complex.
Resolution2.501 Å
Binding residue
(original residue number in PDB)		A3 Y7 I8
Binding residue
(residue number reindexed from 1)		A3 Y7 I8
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0009055 electron transfer activity
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009512 cytochrome b6f complex
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4ogq, PDBe:4ogq, PDBj:4ogq
PDBsum4ogq
PubMed24931468
UniProtQ8YVQ2|PETL_NOSS1 Cytochrome b6-f complex subunit 6 (Gene Name=petL)

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