Structure of PDB 3gut Chain E Binding Site BS02

Receptor Information

>3gut Chain E (length=273) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTG
PGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGI
QCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDP
AGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDK
VQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRV
SMQLRRPSDRELSEPMEFQYLPD

Ligand information

>3gut Chain J (length=26) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

ttggaaagtccccagcggaaagtccc

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3gut Structural basis of HIV-1 activation by NF-kappaB--a higher-order complex of p50:RelA bound to the HIV-1 LTR.
Resolution	3.59 Å
Binding residue (original residue number in PDB)	M32 R35 A43
Binding residue (residue number reindexed from 1)	M14 R17 A25
Binding affinity	PDBbind-CN: Kd=1.5nM

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0003700	DNA-binding transcription factor activity

	Biological Process
GO:0006355	regulation of DNA-templated transcription

	Cellular Component
GO:0005737	cytoplasm

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Cellular Component

External links

PDB	RCSB:3gut, PDBe:3gut, PDBj:3gut
PDBsum	3gut
PubMed	19683540
UniProt	Q04206\|TF65_HUMAN Transcription factor p65 (Gene Name=RELA)

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