Structure of PDB 1yfj Chain E Binding Site BS02
Receptor Information
>1yfj Chain E (length=243) Species:
10665
(Tequatrovirus T4) [
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MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLAND
IQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDP
LLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKI
IFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSL
NDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLTDEVYIFN
Ligand information
>1yfj Chain 0 (length=15) [
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tcacaggatcctgtg
Receptor-Ligand Complex Structure
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PDB
1yfj
Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase.
Resolution
2.69 Å
Binding residue
(original residue number in PDB)
T8 N10 S112 R130 N133 N135 R139
Binding residue
(residue number reindexed from 1)
T8 N10 S112 R130 N133 N135 R139
Enzymatic activity
Enzyme Commision number
2.1.1.72
: site-specific DNA-methyltransferase (adenine-specific).
Gene Ontology
Molecular Function
GO:0003676
nucleic acid binding
GO:0003677
DNA binding
GO:0008168
methyltransferase activity
GO:0009007
site-specific DNA-methyltransferase (adenine-specific) activity
GO:0009008
DNA-methyltransferase activity
GO:0043565
sequence-specific DNA binding
GO:1904047
S-adenosyl-L-methionine binding
Biological Process
GO:0006260
DNA replication
GO:0006298
mismatch repair
GO:0009307
DNA restriction-modification system
GO:0019049
virus-mediated perturbation of host defense response
GO:0032259
methylation
GO:0052170
symbiont-mediated suppression of host innate immune response
GO:0099018
symbiont-mediated evasion of host restriction-modification system
View graph for
Molecular Function
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Biological Process
External links
PDB
RCSB:1yfj
,
PDBe:1yfj
,
PDBj:1yfj
PDBsum
1yfj
PubMed
15882618
UniProt
P04392
|DMA_BPT4 DNA adenine methylase (Gene Name=DAM)
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