Structure of PDB 4v9k Chain DZ Binding Site BS02

Receptor Information

>4v9k Chain DZ (length=185) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

YRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQAS
IHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPL
RFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHA
SDLKLPPGVELAVSPEETIAAVVPPEDVEKLAEEA

Ligand information

>4v9k Chain DB (length=119) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

ucccccgugcccauagcggcguggaaccacccguucccauuccgaacacg
gaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccuggga
gaguaggucggugcggggg

.<<<<<<<<<<....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>><<<.......<<<<<<<<....>>>>>>>>..
.....>>>.>>>>>>>>>>

Receptor-Ligand Complex Structure

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Structure summary

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PDB	4v9k Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation.
Resolution	3.5 Å
Binding residue (original residue number in PDB)	R10 P15 R19 V27 Y29 R72 Q73 N75 E84 H85
Binding residue (residue number reindexed from 1)	R8 P13 R17 V25 Y27 R70 Q71 N73 E82 H83

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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External links

PDB	RCSB:4v9k, PDBe:4v9k, PDBj:4v9k
PDBsum	4v9k
PubMed	23812722
UniProt	Q72IA7\|RL25_THET2 Large ribosomal subunit protein bL25 (Gene Name=rplY)

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