Structure of PDB 8qkt Chain DDD Binding Site BS02

Receptor Information
>8qkt Chain DDD (length=96) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEAS
RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Ligand information
>8qkt Chain JJJ (length=167) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtag
acagctctagcaccgcttaaacgcacgtacggattccgtacgtgcgttta
agcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggat
tgtgaaaaaaaaaagat
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8qkt Engineering nucleosomes for generating diverse chromatin assemblies.
Resolution3.261 Å
Binding residue
(original residue number in PDB)		K27 R28 R30 K31 I36 Y37
Binding residue
(residue number reindexed from 1)		K2 R3 R5 K6 I11 Y12
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8qkt, PDBe:8qkt, PDBj:8qkt
PDBsum8qkt
PubMed
UniProtP06899|H2B1J_HUMAN Histone H2B type 1-J (Gene Name=H2BC11)

[Back to BioLiP]