Structure of PDB 8y4b Chain D Binding Site BS02

Receptor Information
>8y4b Chain D (length=248) Species: 863372 (Herbaspirillum huttiense) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRLAGKTVLITAAAQGIGRASTELFAREGARVIATDISKTHLEELASIAG
VETHLLDVTDDDAIKALVAKVGTVDVLFNCAGYVAAGNILECDDKAWDFS
FNLNAKAMFHTIRAVLPGMLAKKAGSIVNIASAASSVKGVANRFAYGASK
AAVVGLTKSVAADFVSQGIRCNAICPGTIESPSLNQRISTQAKETGSEDE
VRAAFVARQPMGRIGKAEEVAALALYLASDESNFTTGSIHMIDGGWSN
Ligand information
Ligand IDA1LXB
InChIInChI=1S/C6H8O5/c1-3-4(7)2-6(10,11-3)5(8)9/h3,10H,2H2,1H3,(H,8,9)/t3-,6-/m0/s1
InChIKeyRVGZVGXMALCWOM-DZSWIPIPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@H]1C(=O)C[C@](O1)(C(=O)O)O
OpenEye OEToolkits 2.0.7CC1C(=O)CC(O1)(C(=O)O)O
CACTVS 3.385C[CH]1O[C](O)(CC1=O)C(O)=O
CACTVS 3.385C[C@@H]1O[C@@](O)(CC1=O)C(O)=O
FormulaC6 H8 O5
NameL-2,4-diketo-3-deoxyfuconate;
(2~{S},5~{S})-5-methyl-2-oxidanyl-4-oxidanylidene-oxolane-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain8y4b Chain D Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8y4b Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a alpha-furanosyl hemiketal of substrates.
Resolution1.67 Å
Binding residue
(original residue number in PDB)
S137 R148 Y151 G182 R192 R214
Binding residue
(residue number reindexed from 1)
S132 R143 Y146 G177 R187 R208
Annotation score1
External links