Structure of PDB 8wy5 Chain D Binding Site BS02

Receptor Information
>8wy5 Chain D (length=445) Species: 1053225 (Bacillus cereus VD045) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKFSNITIKNFRNFEKVNINLDNKNVIFGMNDIGKTNFLYALRFLLDKEI
RKFGFNKSDYHKHDTSKKIEIILTLDLSNYEKDEDTKKLISVVKGARTSA
NADVFYIALESKYDDKELYGNIILKWGSELDNLIDIPGRGNINALDNVFK
VIYINPKIVIYLIEEPEISLHRSMQIALSKQLFEQSTYKYFFLSTHSPEL
LYEMDNTRLIRVHSTEKVVCSSHMYNVVKKKLNKALSSALFAERVLLIEG
PSEKILFEKVLDEVEPEYELNGGFLLEVGGTYFNHYVCTLNDLGITHIIK
TDNDLKSKKGKKGVYELLGLNRCLNLLGRENLDEITIDIPEDIKGKKKKE
RLNERKKEIFKQYKNEVGEFLGERIYLSEIDLENDLYSAIGESMKRIFEN
EDPVHYLQKSKLFNMVELVNNLSTKDCFDVFEHEKFACLKELVGS
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8wy5 nucleotide-sensing endonuclease with dsDNA
Resolution3.12 Å
Binding residue
(original residue number in PDB)
P381 S382 G409 D434 K436 S437 K439 K541 L542
Binding residue
(residue number reindexed from 1)
P251 S252 G279 D304 K306 S307 K309 K411 L412
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:8wy5, PDBe:8wy5, PDBj:8wy5
PDBsum8wy5
PubMed38471529
UniProtJ8H9C1|GAJA_BACC6 Endonuclease GajA (Gene Name=gajA)

[Back to BioLiP]