Structure of PDB 8u4d Chain D Binding Site BS02

Receptor Information
>8u4d Chain D (length=559) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LDVARKTLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ
AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS
ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI
TNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVH
SSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDR
FVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGE
ILSVSGGVYFFFRGIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVV
LYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLC
RFMFVYLVFLFGFSTAVVTLIEDGKYNSLYSTCLELFKFTIGMGDLEFTE
NYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQR
AITILDTEKSFRKAFRSGKLLQVGFTPDGKDDYRWCFRVDEVNWTTWNTN
VGIINEDPG
Ligand information
Ligand IDVPN
InChIInChI=1S/C45H83Br4O13P/c1-3-5-7-9-13-19-25-34(46)36(48)27-21-15-11-17-23-29-38(50)59-31-33(32-60-63(57,58)62-45-43(55)41(53)40(52)42(54)44(45)56)61-39(51)30-24-18-12-16-22-28-37(49)35(47)26-20-14-10-8-6-4-2/h33-37,40-45,52-56H,3-32H2,1-2H3,(H,57,58)/t33-,34-,35?,36+,37?,40-,41-,42+,43+,44+,45-/m0/s1
InChIKeyCXUUJLFCERQNTC-GLNOFRAPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCC[C@@H]([C@@H](CCCCCCCC(=O)OC[C@@H](COP(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1O)O)O)O)O)OC(=O)CCCCCCCC(C(CCCCCCCC)Br)Br)Br)Br
CACTVS 3.385CCCCCCCC[CH](Br)[CH](Br)CCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O)OC(=O)CCCCCCCC(Br)C(Br)CCCCCCCC
CACTVS 3.385CCCCCCCC[C@H](Br)[C@H](Br)CCCCCCCC(=O)OC[C@@H](CO[P](O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)OC(=O)CCCCCCCC(Br)C(Br)CCCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCC(C(CCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O)OC(=O)CCCCCCCC(C(CCCCCCCC)Br)Br)Br)Br
ACDLabs 12.01OP(=O)(OC1C(O)C(O)C(O)C(O)C1O)OCC(COC(=O)CCCCCCCC(Br)C(Br)CCCCCCCC)OC(=O)CCCCCCCC(Br)C(Br)CCCCCCCC
FormulaC45 H83 Br4 O13 P
Name(2S)-2-[(9,10-dibromooctadecanoyl)oxy]-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9R,10S)-9,10-dibromooctadecanoate
ChEMBL
DrugBank
ZINC
PDB chain8u4d Chain D Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8u4d Structural basis of TRPV1 modulation by endogenous bioactive lipids.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
H410 Y511 S512 L515 F543 A546 M547 T550 R557 E570 Q700
Binding residue
(residue number reindexed from 1)
H232 Y333 S334 L337 F365 A368 M369 T372 R379 E392 Q499
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0055085 transmembrane transport
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8u4d, PDBe:8u4d, PDBj:8u4d
PDBsum8u4d
PubMed38698206
UniProtO35433|TRPV1_RAT Transient receptor potential cation channel subfamily V member 1 (Gene Name=Trpv1)

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