Structure of PDB 8syi Chain D Binding Site BS02

Receptor Information
>8syi Chain D (length=620) Species: 32046 (Synechococcus elongatus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EQRFDYVKIALASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMD
GLFCEKIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGF
IKLAAPVAHVWYLKGIPSYIAILLDMPLRDVEQIVYFNSYVVLNPGNHSE
LQYKQLLNEDQWMEIEDQIYAEESDLEGIEVGIGAEALQQLLQDLNLNEE
SEKLRQEIAESKGQKRAKLIKRLRVIDNFIGTESRPEWMVLNVIPVIPPD
LRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRM
LQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVD
YSGRSVIVVGPNLKIHQCGLPREMAIELFQPFVIHRLIKNHSINNIKQAK
KLIQKNDPLIWDVLEEVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQ
LHPLVCPAFNADFDGDQMAVHVPLSIEAQAEARMLMLASGNILSPATGQP
IVTPSQDMVLGCYYLTAENPGAQKGAGRYFANLEDAIRAFEQGSVDLHAW
VWVRFDGEVESEGESDEPESVVAADDGTVTKTYRFRRIRETEDGQRLSQY
VKTTPGRILFNNTVQTALIH
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8syi Cryo-EM structure of a cyanobacterial RNAP elongation complex
Resolution2.94 Å
Binding residue
(original residue number in PDB)		L261 D470
Binding residue
(residue number reindexed from 1)		L257 D466
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8syi, PDBe:8syi, PDBj:8syi
PDBsum8syi
PubMed38354263
UniProtP42079|RPOC1_SYNE7 DNA-directed RNA polymerase subunit gamma (Gene Name=rpoC1)

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