Structure of PDB 8rzb Chain D Binding Site BS02

Receptor Information
>8rzb Chain D (length=149) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VRSLNCTLRDSQQKSLVMSGPYELKALHLQGQDMEQQVVFSMSFVQGSND
KIPVALGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPKKKMEKRFVFNKI
EINNKLEFESAQFPNWYISTSQAENMPVFLGGTKGGQDITDFTMQFVSS
Ligand information
Ligand IDA1H4A
InChIInChI=1S/C35H37F3N6O7S/c1-23-7-8-24(20-28(23)35(36,37)38)27-19-25(34(47)48)21-42-22-29(40-31(27)42)33(46)44-14-13-43(52(49,50)26-5-3-2-4-6-26)11-9-30(44)32(45)39-10-12-41-15-17-51-18-16-41/h2-8,19-22,30H,9-18H2,1H3,(H,39,45)(H,47,48)/t30-/m0/s1
InChIKeyCYRHEZSFDUZNDQ-PMERELPUSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cc1ccc(cc1C(F)(F)F)c2cc(cn3cc(nc23)C(=O)N4CCN(CC[C@H]4C(=O)NCCN5CCOCC5)[S](=O)(=O)c6ccccc6)C(O)=O
OpenEye OEToolkits 2.0.7Cc1ccc(cc1C(F)(F)F)c2cc(cn3c2nc(c3)C(=O)N4CCN(CCC4C(=O)NCCN5CCOCC5)S(=O)(=O)c6ccccc6)C(=O)O
OpenEye OEToolkits 2.0.7Cc1ccc(cc1C(F)(F)F)c2cc(cn3c2nc(c3)C(=O)N4CCN(CC[C@H]4C(=O)NCCN5CCOCC5)S(=O)(=O)c6ccccc6)C(=O)O
CACTVS 3.385Cc1ccc(cc1C(F)(F)F)c2cc(cn3cc(nc23)C(=O)N4CCN(CC[CH]4C(=O)NCCN5CCOCC5)[S](=O)(=O)c6ccccc6)C(O)=O
FormulaC35 H37 F3 N6 O7 S
Name8-[4-methyl-3-(trifluoromethyl)phenyl]-2-[[(7S)-7-(2-morpholin-4-ylethylcarbamoyl)-4-(phenylsulfonyl)-1,4-diazepan-1-yl]carbonyl]imidazo[1,2-a]pyridine-6-carboxylic acid;
LIPID FRAGMENT
ChEMBL
DrugBank
ZINC
PDB chain8rzb Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8rzb Ligandability Assessment of IL-1 beta by Integrated Hit Identification Approaches.
Resolution1.836 Å
Binding residue
(original residue number in PDB)
K103 E105 N108 L110 T147 M148 Q149 F150
Binding residue
(residue number reindexed from 1)
K99 E101 N104 L106 T143 M144 Q145 F146
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8rzb, PDBe:8rzb, PDBj:8rzb
PDBsum8rzb
PubMed38728572
UniProtP01584|IL1B_HUMAN Interleukin-1 beta (Gene Name=IL1B)

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