Structure of PDB 8rdj Chain D Binding Site BS02

Receptor Information
>8rdj Chain D (length=611) Species: 3728 (Sinapis alba) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIDRYKHQQLRIGLVSPQQISAWATGEVTKPYTFHYKTNKPEKDGLFCER
IFGPIKSGICACGNYRVIKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHV
WYLKRLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEY
EIQSWKYSIPLFFTTQGFEIFRNREISTGAGAIREQLADLDLRIIIENSL
VEWKQLGEEDRKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPP
ELRPDINELYRRVIYRNNTLTDLLVMCQEKLVQEAVDTLLDNGIRGQPMR
DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCG
LPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQ
GHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMA
VHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGT
RRGICANRYNPCEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIAS
KEVPIEVHYESFGNYHEIYAHYLIVRSVKKETLYIYIRTTVGHISFYREI
EEAIQGFSQAC
Ligand information
>8rdj Chain Y (length=40) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tcgcgtctctctaaaattgcagtcccgcgcgccgtaggac
Receptor-Ligand Complex Structure
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PDB8rdj Structure of the plant plastid-encoded RNA polymerase.
Resolution2.62 Å
Binding residue
(original residue number in PDB)		R121 D234 R235 K236 I237 H349 K363 R368 R375
Binding residue
(residue number reindexed from 1)		R105 D210 R211 K212 I213 H303 K317 R322 R329
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8rdj, PDBe:8rdj, PDBj:8rdj
PDBsum8rdj
PubMed38428394
UniProtA0A6C0M5W0

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