Structure of PDB 8rbm Chain D Binding Site BS02

Receptor Information
>8rbm Chain D (length=349) Species: 322710 (Azotobacter vinelandii DJ) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVAAGPFAHDRSSVNRIMLDVCLALTPATLFGLVMFGWPAINLWLVTCVS
ALAIEAACLRLLGQPMRRLLDGSALLTGWLLAISLPPWAPWWIGVGGSLF
AIGIGKQLYGGIGQNPFNPAMLARVALLIAFPLQMTTWALPHPLFSSSAP
GFFDSLAITFAGAPLADGMTGATALGNLKTELTLNRTAQEILEGGFSTIS
ALFGSTPGSLGETSELLLLVGGVWLVLRRIIHWEIPVAILASVFVMATLA
YLINPERYAGGLYQLTSGGLILCAFFIATDPVTSPISRVGRLIFGVGCGV
LIYVIRTWGSFPEAAAFAVLFMNALTPLIDRYWRPRAYGRNVRGKPLVA
Ligand information
Ligand IDFMN
InChIInChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,14-/m0/s1
InChIKeyFVTCRASFADXXNN-SCRDCRAPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)O)O)O)O
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
ACDLabs 12.01N=2C(=O)NC(=O)C3=Nc1cc(C)c(C)cc1N(C=23)CC(O)C(O)C(O)COP(=O)(O)O
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C
FormulaC17 H21 N4 O9 P
NameFLAVIN MONONUCLEOTIDE;
RIBOFLAVIN MONOPHOSPHATE
ChEMBLCHEMBL1201794
DrugBankDB03247
ZINCZINC000003831425
PDB chain8rbm Chain D Residue 411 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8rbm Architecture of the RNF1 complex that drives biological nitrogen fixation.
Resolution3.24 Å
Binding residue
(original residue number in PDB)		M125 R128 L132 W142 T177 A178 G180 G273 E317 A320 F321
Binding residue
(residue number reindexed from 1)		M121 R124 L128 W138 T173 A174 G176 G269 E313 A316 F317
Annotation score4
Gene Ontology
Biological Process
GO:0022900 electron transport chain
Cellular Component
GO:0005886 plasma membrane

View graph for
Biological Process
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Cellular Component
External links
PDB RCSB:8rbm, PDBe:8rbm, PDBj:8rbm
PDBsum8rbm
PubMed38890433
UniProtC1DMA5

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