Structure of PDB 8pn2 Chain D Binding Site BS02

Receptor Information

>8pn2 Chain D (length=395) Species: 39946 (Oryza sativa Indica Group) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

YFLWPTSNLQHCAAEGRANYFGNLQPKGQQANSLLDLMTIRAFHSKILRR
FSLGTAVGFRIRKGDLTDIPAILVFVARKVHKKWLNPAQCLPAILEGPGG
VWCDVDVVEFSYYGAPQMFSELVDKLCGSDECIGSGSQVASHETFGTLGA
IVKRRTGNKQVGFLTNRHVAVDLDYPNQKMFHPLPPNLGPGVYLGAVERA
TSFITDDVWYGIYAGTNPETFVRADGAFIPFADDFDISTVTTVVRGVGDI
GDVKVIDLQCPLNSLIGRQVCKVGRSSGHTTGTVMAYALEYNDEKGICFF
TDILVVGENRQTFDLEGDSGSLIILTSQDGEKPRPIGIIWGGTANRGRLK
LTSDHGPENWTSGVDLGRLLDRLELDIIITNESLQDAVQQQRFAL

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8pn2 Chain D Residue 1002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8pn2 The catalytic triad of rice NARROW LEAF1 involves H234
Resolution	2.63 Å
Binding residue (original residue number in PDB)	I121 D166
Binding residue (residue number reindexed from 1)	I61 D106
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0010222	stem vascular tissue pattern formation
GO:0010305	leaf vascular tissue pattern formation
GO:0080006	internode patterning
GO:2000024	regulation of leaf development

	Cellular Component
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005737	cytoplasm

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Biological Process

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Cellular Component

External links

PDB	RCSB:8pn2, PDBe:8pn2, PDBj:8pn2
PDBsum	8pn2
PubMed	38600265
UniProt	B4XT64\|NAL1_ORYSJ Protein NARROW LEAF 1 (Gene Name=NAL1)

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