Structure of PDB 8pmi Chain D Binding Site BS02

Receptor Information

>8pmi Chain D (length=408) Species: 39946 (Oryza sativa Indica Group) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

YFLWPTSNLQHCAAEGRANYFGNLQKGLLPRHPGRLPKGQQANSLLDLMT
IRAFHSKILRRFSLGTAVGFRIRKGDLTDIPAILVFVARKVHKKWLNPAQ
CLPAILEGPGGVWCDVDVVEFSYYGAPAQTPKEQMFSELVDKLCGSDECI
GSGSQVASHETFGTLGAIVKRRTGNKQVGFLTNRHVAVDLDYPNQKMFHP
LPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPFAD
DFDISTVTTVVRGVGDIGDVKVIDLQCPLNSLIGRQVCKVGRSSGHTTGT
VMAYALEYNDEKGICFFTDILVVGENRQTFDLEGDSGSLIILTSQDGEKP
RPIGIIWGGTANRGRLKLTSDHGPENWTSGVDLGRLLDRLELDIIITNES
LQDAVQQQ

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8pmi Chain D Residue 1002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	8pmi The catalytic triad of rice NARROW LEAF1 involves H234
Resolution	2.83 Å
Binding residue (original residue number in PDB)	I121 D166
Binding residue (residue number reindexed from 1)	I72 D117
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:8pmi, PDBe:8pmi, PDBj:8pmi
PDBsum	8pmi
PubMed	38600265
UniProt	B4XT64\|NAL1_ORYSJ Protein NARROW LEAF 1 (Gene Name=NAL1)

[Back to BioLiP]