Structure of PDB 8jho Chain D Binding Site BS02

Receptor Information
>8jho Chain D (length=96) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEAS
RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Ligand information
>8jho Chain J (length=340) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aatacatgcacaggatgtatatatctgacacgtgcctggagactagggag
taatccccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
ctccagtctagaactggcagtactttcaatacatgcacaggatgtatata
tctgacacgtgcctggagactagggagtaatccccttggcggttaaaacg
cgggggacagcgcgtacgtgcgtttaagcggtgctagagctgtctacgac
caattgagcggcctcggcaccgggattctcgatatcgaat
Receptor-Ligand Complex Structure
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PDB8jho Structure of histone deacetylase complex Rpd3S bound to nucleosome
Resolution7.6 Å
Binding residue
(original residue number in PDB)		R26 T29 R30 Y39 G50 I51 S52 S53 R83 S84 T85
Binding residue
(residue number reindexed from 1)		R1 T4 R5 Y14 G25 I26 S27 S28 R58 S59 T60
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:8jho, PDBe:8jho, PDBj:8jho
PDBsum8jho
PubMed37798513
UniProtP02281|H2B11_XENLA Histone H2B 1.1

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