Structure of PDB 8jc1 Chain D Binding Site BS02

Receptor Information

>8jc1 Chain D (length=267) Species: 554 (Pectobacterium carotovorum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ATYKIKDLTGNVEFECSDDTYILDAAEEAGLDLPYSCRAGSCSSCVALLI
SGSVDQRDASFLDEEQQKYFVLTCAAYPNSNCVIKTGVEEMLLGYDSYRD
MSEYLFGLLGGNDSPELLDGLFTPVDAFRHYLFGNGTNKSININDVGLSI
DVSQIPPIMNIINQGFIGRFDISSDFNRNTVLDGIIPASYLGNITLKTEG
VLSISPDGAWSYNGGIRAYNDLYDANPSTHRDRLGEWSTGVLDKFNGTPY
EIQIPGTLDISGRGQRL

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8jc1 Chain D Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8jc1 Crystal structure of pectocin M1 reveals diverse conformations and interactions during its initial step via the ferredoxin uptake system.
Resolution	2.04 Å
Binding residue (original residue number in PDB)	L192 N194 D222
Binding residue (residue number reindexed from 1)	L191 N193 D221
Annotation score	4

External links

PDB	RCSB:8jc1, PDBe:8jc1, PDBj:8jc1
PDBsum	8jc1
PubMed	39123319
UniProt	C6DJ69

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