Structure of PDB 8e6u Chain D Binding Site BS02

Receptor Information
>8e6u Chain D (length=1337) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IKKKECVYFVESSKLSDAGKVVCQCGYTHEQHLEEATKPHTFQGTQWDPK
KHVQEMPTDAFGDIVFTGLSQKVKKYVRVSQDTPSSVIYHLMTQHWGLDV
PNLLISVTGGAKNFNMKPRLKSIFRRGLVKVAQTTGAWIITGGSHTGVMK
QVGEAVRDFSLSSSYKEGELITIGVATWGTVHRREGLIHPTGSFPAEYIL
DEDGQGNLTCLDSNHSHFILVDDGTHGQYGVEIPLRTRLEKFISEQTKER
GGVAIKIPIVCVVLEGGPGTLHTIDNATTNGTPCVVVEGSGRVADVIAQV
ANLPVSDITISLIQQKLSVFFQEMFETFTESRIVEWTKKIQDIVRRRQLL
TVFREGKDGQQDVDVAILQALLKASRSQDHFGHENWDHQLKLAVAWNRVD
IARSEIFMDEWQWKPSDLHPTMTAALISNKPEFVKLFLENGVQLKEFVTW
DTLLYLYENLDPSCLFHSKLQKVLVEDPERPACAPAAPRLQMHHVAQVLR
ELLGDFTQPLYPRPRHNDRLRLLLPVPHVKLNVQGVSLRSLYKRSSGHVT
FTMDPIRDLLIWAIVQNRRELAGIIWAQSQDCIAAALACSKILKELSKEE
EDTDSSEEMLALAEEYEHRAIGVFTECYRKDEERAQKLLTRVSEAWGKTT
CLQLALEAKDMKFVSHGGIQAFLTKVWWGQLSVDNGLWRVTLCMLAFPLL
LTGLISFREKRLQDVGTPAARARAFFTAPVVVFHLNILSYFAFLCLFAYV
LMVDFQPVPSWCECAIYLWLFSLVCEEMRQLFYDPDECGLMKKAALYFSD
FWNKLDVGAILLFVAGLTCRLIPATLYPGRVILSLDFILFCLRLMHIFTI
SKTLGPKIIIVKRMMKDVFFFLFLLAVWVVSFGVAKQAILIHNERRVDWL
FRGAVYHSYLTIFGQIPGYIDGFPEWLTVLLLCLYLLFTNILLLNLLIAM
FNYTFQQVQEHTDQIWKFQRHDLIEEYHGRPAAPPPFILLSHLQLFIKRV
VLKTPAKRHKQLKNKLEKNEEAALLSWEIYLKENYLQNRQFQQKQRPEQK
IEDISNKVDAMVDLLDLDGDSYHVNARHLLYPNCPVTRFPVPNEKVPWET
EFLIYDPPFYTAERKDAAAMDPMGDTLEPLSTIQYNVVDGLRDRRSFHGP
YTVQAGLPLNPMGRTGLRGRGSLSCFGPNHTLYPMVTRWRRNEDGAICRK
SIKKMLEVLVVKLPLSEHWALPGGSREPGEMLPRKLKRILRQEHWPSFEN
LLKCGMEVYKGYMDDPRNTDNAWIETVAVSVHFQDQNDVELNRLNSNLHA
CDSGASIRWQVVDRRIPLYANHKTLLQKAAAEFGAHY
Ligand information
Ligand IDUOZ
InChIInChI=1S/C21H27N5O13P2/c22-18-15-20(24-9-23-18)26(19(25-15)10-4-2-1-3-5-10)14-6-11(27)12(37-14)7-35-40(31,32)39-41(33,34)36-8-13-16(28)17(29)21(30)38-13/h1-5,9,11-14,16-17,21,27-30H,6-8H2,(H,31,32)(H,33,34)(H2,22,23,24)/t11-,12+,13+,14+,16+,17-,21+/m0/s1
InChIKeyHDAKJMFIHMDGRC-SXAIUVOJSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Nc1ncnc2n([CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)O3)c(nc12)c5ccccc5
OpenEye OEToolkits 2.0.7c1ccc(cc1)c2nc3c(ncnc3n2[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)OP(=O)(O)OC[C@@H]5[C@H]([C@@H]([C@@H](O5)O)O)O)O)N
OpenEye OEToolkits 2.0.7c1ccc(cc1)c2nc3c(ncnc3n2C4CC(C(O4)COP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)O)O)O)O)N
CACTVS 3.385Nc1ncnc2n([C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@@H](O)[C@@H](O)[C@@H]4O)O3)c(nc12)c5ccccc5
ACDLabs 12.01OC1C(COP(=O)(O)OP(=O)(O)OCC2OC(CC2O)n2c3ncnc(N)c3nc2c2ccccc2)OC(O)C1O
FormulaC21 H27 N5 O13 P2
Name[(2R,3S,5R)-5-(6-amino-8-phenyl-9H-purin-9-yl)-3-hydroxyoxolan-2-yl]methyl [(2R,3S,4S,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)
ChEMBL
DrugBank
ZINC
PDB chain8e6u Chain D Residue 2002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8e6u A unified mechanism for human TRPM2 activation, desensitization and inhibition
Resolution3.2 Å
Binding residue
(original residue number in PDB)
G1390 P1432 R1433 Y1485 N1487 H1488
Binding residue
(residue number reindexed from 1)
G1224 P1266 R1267 Y1319 N1321 H1322
Annotation score1
External links
PDB RCSB:8e6u, PDBe:8e6u, PDBj:8e6u
PDBsum8e6u
PubMed
UniProtO94759|TRPM2_HUMAN Transient receptor potential cation channel subfamily M member 2 (Gene Name=TRPM2)

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